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2020 / 2011

Publications

    • Díaz-García L, Bugg TDH, Jiménez DJ. (2020). Exploring the Lignin Catabolism Potential of Soil-Derived Lignocellulolytic Microbial Consortia by a Gene-Centric Metagenomic Approach. Microbial Ecology. https://doi.org/10.1007/s00248-020-01546-1
    • Pratama AA, Jiménez DJ, Chen Q, Bunk B, Spröer C, Overmann J, van Elsas JD. (2020). Delineation of a Subgroup of the Genus Paraburkholderia, Including P. terrae DSM 17804T, P. hospita DSM 17164T, and Four Soil-Isolated Fungiphiles, Reveals Remarkable Genomic and Ecological Features-Proposal for the Definition of a P. hospita Species Cluster. Genome Biology and Evolution. 12(4): 325-344.
    • Jiménez DJ, Wang Y, Chaib de Mares M, Cortes-Tolalpa L, Mertens JA, Hector RE, Lin J, Johnson J, Lipzen A, Barry K, Mondo SJ, Grigoriev IV, Nichols NN, van Elsas JD. (2020). Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium. FEMS Microbiology Ecology. 96(1):fiz186.
    • Mondo SJ*, Jiménez DJ*, Hector RE, Lipzen A, Yan M, LaButti K, Barry K, van Elsas JD, Grigoriev IV, Nichols NN. (2019). Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery. Biotechnology for Biofuels. 12:229. *equal contributors
    • Serrano-Gamboa JG, Rojas-Herrera RA, González-Burgos A, Folch-Mallol JL, Jiménez DJ, Sánchez-González MN. (2019). Degradation profile of nixtamalized maize pericarp by the action of the microbial consortium PM-06. AMB Express. 9(1):85.
    • Chaib De Mares M*, Jiménez DJ*, Palladino G, Gutleben J, Lebrun LA, Muller EEL, Wilmes P, Sipkema D, van Elsas JD. (2018). Expressed protein profile of a Tectomicrobium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics. Scientific Reports. 8(1):11795. *equal contributors
    • Jiménez DJ, Chaib de Mares M, Salles JF. (2018). Temporal Expression Dynamics of Plant Biomass-Degrading Enzymes by a Synthetic Bacterial Consortium Growing on Sugarcane Bagasse. Frontiers in Microbiology. 9: 299.
    • Jiménez DJ, Dini-Andreote F, DeAngelis MK, Singer SW, Salles JF, van Elsas JD. (2017). Ecological insights in the dynamics of plant biomass-degrading microbial consortia. Trends in Microbiology. 25(10):788-796.
    • Maruthamuthu M*, Jiménez DJ*, van Elsas JD (2017). Characterization of a furan aldehyde-tolerant β-xylosidase/α-arabinosidase obtained through a synthetic metagenomics approach. Journal of Applied Microbiology. 123(1):145-158. *equal contributors
    • Jiménez DJ, Hector RE, Riley R, Lipzen A, Kuo RC, Amirebrahimi M, Barry KW, Grigoriev IV, van Elsas JD, Nichols NN (2017). Draft genome sequence of Coniochaeta ligniaria NRRL 30616, a lignocellulolytic fungus for bioabatement of inhibitors in plant biomass hydrolysates. Genome Announcements. 5(4): e01476-16.
    • Jiménez DJ , de Lima Brossi MJ, Schückel J, Kračun SK, Willats WGT, van Elsas JD (2016). Characterization of three plant biomass-degrading microbial consortia by metagenomics- and metasecretomics-based approaches. Applied Microbiology and Biotechnology. 100(24): 10463–10477.
    • Maruthamuthu M*, Jiménez DJ*, Stevens P, van Elsas JD (2016). A multi-substrate approach for functional metagenomics-based screening for (hemi)cellulases in two wheat straw degrading microbial consortia unveils novel thermoalkaliphilic enzymes. BMC Genomics. 17:86. *equal contributors
    • Cortes-Tolalpa L, Jiménez DJ, de Lima Brossi MJ, Salles JF, van Elsas JD (2016). Different inocula produce distinctive microbial consortia with similar lignocellulose degradation capacity. Applied Microbiology and Biotechnology. 100(17): 7713-7725.
    • Brossi MJL, Jiménez DJ, Cortes-Tolalpa L, van Elsas JD (2016). Soil-derived microbial consortia enriched with different plant biomass reveal distinct players acting in lignocellulose degradation. Microbial Ecology. 71: 616–627.
    • Korenblum E, Jiménez DJ, van Elsas JD (2016). Succession of lignocellulolytic bacterial consortia bred anaerobically from lake sediment Microbial Biotechnology. 9(2): 224–234.
    • Jiménez DJ*, Maruthamuthu M*, van Elsas JD (2015). Metasecretome analysis of a lignocellulolytic microbial consortium grown on wheat straw, xylan and xylose. Biotechnology for Biofuels. 8:199. *equal contributors
    • Jiménez DJ, Chaves-Moreno D, van Elsas JD (2015). Unveiling the metabolic potential of two soil-derived microbial consortia selected on wheat straw. Scientific Reports. 5:13845.
    • Jiménez DJ, Dini-Andreote F, Ottoni JR, de Oliveira VM, van Elsas JD, Andreote FD (2015). Compositional profile of α/β-hydrolase fold proteins in mangrove soil metagenomes: prevalence of epoxide hydrolases and haloalkane dehalogenases in oil contaminated sites. Microbial Biotechnology. 8: 604–613.
    • Jiménez DJ, Dini-Andreote F, van Elsas JD (2014). Metataxonomic profiling and prediction of functional behaviour of wheat straw degrading microbial consortia. Biotechnology for Biofuels. 7:92
    • Jiménez DJ, Korenblum E, van Elsas JD (2014). Novel multispecies microbial consortia involved in lignocellulose and 5-hydroxymethylfurfural bioconversion. Applied Microbiology and Biotechnology.  98(6): 2789-2803.
    • Jiménez DJ, Andreote FD, Chaves-Moreno D, Montaña JS, Osorio-Forero C, Junca H, Zambrano MM, Baena S (2012). Structural and functional insights from the metagenome of an acidic hot spring microbial planktonic community in the Colombian Andes. PLoS One. 7(12): e52069.
    • Jiménez DJ, Montaña JS, Alvarez D, Baena S (2012). A novel cold active esterase derived from Colombian high Andean forest soil metagenome. World Journal of Microbiology and Biotechnology. 28(1): 361-370.
    • Andreote FD, Jiménez DJ, Chaves D, Dias AC, Luvizotto DM, Dini-Andreote F, Fasanella CC, Lopez MV, Baena S, Taketani RG, de Melo IS (2012). The microbiome of Brazilian mangrove sediments as revealed by metagenomics. PLoS One. 7(6): e38600.
    • Montaña JS, Jiménez DJ, Hernández M, Angel T, Baena S (2012). Taxonomic and functional assignment of cloned sequences from high Andean forest soil metagenome. Antonie Van Leeuwenhoek. 101(2): 205-15.
    • Jiménez DJ, Montaña JS, Martinez MM (2011). Characterization of free nitrogen fixing bacteria of the genus Azotobacter in organic vegetable-grown Colombian soils. Brazilian Journal of Microbiology. 42(3): 846-858.